In an effort to make it easier to get started with IBM Functional Genomics Platform, we now have a docker image with python2 and python3 pre-installed.
- It comes with the latest
omxwaresdk pre-installed along with a bunch of python libs like
numpyand some others.
- This image also comes with a Jupyter server pre-installed.
docker run -d --name jupyter --restart always -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes -v /mnt/storage/jupyter:/home/jovyan/work c0mpiler/jupyter start.sh jupyter lab --LabApp.token=‘omxware’
- Change the mount point
/mnt/storage/jupyterto whatever you want on you host machine – so you can share files from your host with this docker img
- This image also has some example Jupyter notebooks for you to look at and get started
- Once you run the docker image – you can open up
http://<host-name>:8888/lab?in your browser and the pwd is
- The host-name is that of your host machine you run this docker image on. If you are running it on your laptop, the host-name is either
Feel free to share with anyone you are helping to get started using IBM Functional Genomics Platform.